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SRX7202439: GSM4188896: Cardiomyocytes, E18.5 BiNuc Rep3; Mus musculus; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2500) run: 43.5M spots, 13.1G bases, 5.1Gb downloads

Submitted by: NCBI (GEO)
Study: Direct comparison of mononucleated and binucleated cardiomyocytes reveals molecular mechanisms underlying distinct proliferative competencies
show Abstracthide Abstract
The mammalian heart is incapable of regenerating a sufficient number of cardiomyocytes to ameliorate the loss of contractile muscle after acute myocardial injury, often resulting in heart failure. Several reports have demonstrated that mononucleated (MoNuc) cardiomyocytes are more responsive to pro-proliferative stimuli than are binucleated (BiNuc) cardiomyocytes. However, techniques to isolate and characterize these two different cardiomyocyte populations have been lacking. We have developed a novel fluorescence associated cell sorting method to isolate highly enriched populations of MoNuc and BiNuc cardiomyocytes at various times of development. Transcriptome analysis reveals an underlying biological signature that defines the differences between MoNucs and BiNucs, including a central role for the E2f/Rb transcriptional network in establishing the divergent ability of these two populations to re-enter and complete the cell cycle. Moreover, inducing binucleation by genetically blocking the ability of cardiomyocytes to complete cytokinesis leads to a reduction in E2f target gene expression, linking the E2f pathway with nucleation. These data identify key molecular differences between MoNuc and BiNuc mammalian cardiomyocytes that can be used to leverage cardiomyocyte proliferation for promoting injury repair in the heart. Overall design: Cardiomyocytes were isolated from Mlc2vcre:R26REYFP mice and sorted by FACS to separate mononucleated and binucleated cardiomyocytes for transcriptome analysis
Sample: Cardiomyocytes, E18.5 BiNuc Rep3
SAMN13353274 • SRS5707673 • All experiments • All runs
Organism: Mus musculus
Library:
Instrument: Illumina HiSeq 2500
Strategy: RNA-Seq
Source: TRANSCRIPTOMIC
Selection: cDNA
Layout: PAIRED
Construction protocol: RNA was isolated by phenol-chloroform extraction followed by precipitation with 75% Ethanol. RNA was then purified using the RNeasy micro Kit Library prep was conducted by Genewiz using Illumina truSeq stranded mRNA kit and Clontech SMARTer RNA-seq amplification kit.
Experiment attributes:
GEO Accession: GSM4188896
Links:
Runs: 1 run, 43.5M spots, 13.1G bases, 5.1Gb
Run# of Spots# of BasesSizePublished
SRR1051750943,488,17913.1G5.1Gb2020-02-27

ID:
9458696

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